Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 10864)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 19188)	% of Background Sequences with Motif
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-41	-9.543e+01	0.0000	239.0	2.20%	153.5	0.80%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-37	-8.631e+01	0.0000	1439.0	13.27%	1822.7	9.46%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-36	-8.424e+01	0.0000	254.0	2.34%	181.6	0.94%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-35	-8.228e+01	0.0000	933.0	8.61%	1083.7	5.62%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-35	-8.173e+01	0.0000	165.0	1.52%	92.2	0.48%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-34	-8.047e+01	0.0000	2287.0	21.09%	3182.4	16.52%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-34	-7.854e+01	0.0000	1617.0	14.91%	2129.2	11.05%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-32	-7.433e+01	0.0000	816.0	7.53%	940.0	4.88%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-30	-7.083e+01	0.0000	2185.0	20.15%	3070.2	15.93%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-30	-6.966e+01	0.0000	400.0	3.69%	379.0	1.97%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-30	-6.947e+01	0.0000	473.0	4.36%	475.6	2.47%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-28	-6.556e+01	0.0000	399.0	3.68%	386.5	2.01%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-26	-6.091e+01	0.0000	1669.0	15.39%	2297.1	11.92%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-25	-5.863e+01	0.0000	1553.0	14.32%	2125.4	11.03%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-25	-5.759e+01	0.0000	698.0	6.44%	822.8	4.27%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-24	-5.719e+01	0.0000	1992.0	18.37%	2837.3	14.72%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-23	-5.335e+01	0.0000	2130.0	19.65%	3086.2	16.02%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-22	-5.131e+01	0.0000	1666.0	15.37%	2346.0	12.17%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-20	-4.745e+01	0.0000	986.0	9.09%	1294.5	6.72%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-17	-4.055e+01	0.0000	867.0	8.00%	1143.2	5.93%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-17	-3.959e+01	0.0000	262.0	2.42%	262.7	1.36%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-16	-3.888e+01	0.0000	1200.0	11.07%	1674.6	8.69%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-16	-3.749e+01	0.0000	24.0	0.22%	4.9	0.03%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-15	-3.610e+01	0.0000	1209.0	11.15%	1705.5	8.85%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-15	-3.548e+01	0.0000	1491.0	13.75%	2164.4	11.23%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-15	-3.511e+01	0.0000	234.0	2.16%	235.2	1.22%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-14	-3.341e+01	0.0000	1278.0	11.79%	1833.8	9.52%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-14	-3.309e+01	0.0000	488.0	4.50%	602.0	3.12%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-14	-3.292e+01	0.0000	193.0	1.78%	186.7	0.97%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-14	-3.268e+01	0.0000	1283.0	11.83%	1846.6	9.58%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-13	-3.122e+01	0.0000	471.0	4.34%	583.4	3.03%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-13	-3.013e+01	0.0000	429.0	3.96%	525.5	2.73%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-12	-2.951e+01	0.0000	292.0	2.69%	329.3	1.71%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-12	-2.946e+01	0.0000	721.0	6.65%	972.6	5.05%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-12	-2.917e+01	0.0000	413.0	3.81%	505.1	2.62%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-12	-2.914e+01	0.0000	62.0	0.57%	38.0	0.20%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-12	-2.883e+01	0.0000	404.0	3.73%	493.6	2.56%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-12	-2.856e+01	0.0000	519.0	4.79%	666.8	3.46%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-11	-2.705e+01	0.0000	65.0	0.60%	42.4	0.22%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-11	-2.699e+01	0.0000	56.0	0.52%	33.9	0.18%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-11	-2.691e+01	0.0000	374.0	3.45%	456.5	2.37%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-10	-2.519e+01	0.0000	45.0	0.42%	24.1	0.13%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-10	-2.305e+01	0.0000	534.0	4.93%	715.2	3.71%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-9	-2.276e+01	0.0000	322.0	2.97%	395.3	2.05%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-9	-2.154e+01	0.0000	474.0	4.37%	630.6	3.27%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-8	-2.022e+01	0.0000	289.0	2.67%	356.1	1.85%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-6	-1.590e+01	0.0000	749.0	6.91%	1102.6	5.72%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-6	-1.549e+01	0.0000	573.0	5.29%	821.1	4.26%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-6	-1.501e+01	0.0000	106.0	0.98%	111.9	0.58%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-6	-1.447e+01	0.0000	81.0	0.75%	79.3	0.41%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-6	-1.434e+01	0.0000	437.0	4.03%	612.8	3.18%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-6	-1.407e+01	0.0000	403.0	3.72%	560.0	2.91%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-5	-1.294e+01	0.0000	827.0	7.63%	1255.5	6.52%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-5	-1.286e+01	0.0000	145.0	1.34%	172.7	0.90%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-5	-1.283e+01	0.0000	558.0	5.15%	816.1	4.23%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-5	-1.264e+01	0.0000	200.0	1.84%	254.9	1.32%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-5	-1.207e+01	0.0000	380.0	3.50%	536.2	2.78%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-4	-1.137e+01	0.0001	449.0	4.14%	651.6	3.38%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-4	-1.116e+01	0.0001	758.0	6.99%	1158.3	6.01%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-4	-1.070e+01	0.0002	2177.0	20.08%	3572.0	18.54%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-4	-1.069e+01	0.0002	1493.0	13.77%	2400.9	12.46%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-4	-1.064e+01	0.0002	579.0	5.34%	868.1	4.51%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-4	-1.057e+01	0.0002	290.0	2.67%	404.0	2.10%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-4	-1.037e+01	0.0002	220.0	2.03%	295.2	1.53%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-4	-1.007e+01	0.0003	647.0	5.97%	985.8	5.12%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-3	-9.064e+00	0.0008	563.0	5.19%	856.2	4.44%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-3	-9.047e+00	0.0008	1490.0	13.74%	2419.4	12.56%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-3	-8.997e+00	0.0008	72.0	0.66%	81.0	0.42%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-3	-8.774e+00	0.0010	500.0	4.61%	755.5	3.92%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-3	-8.651e+00	0.0011	1634.0	15.07%	2672.9	13.87%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-3	-8.395e+00	0.0014	1022.0	9.43%	1632.7	8.47%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-3	-8.343e+00	0.0015	403.0	3.72%	601.0	3.12%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-3	-8.290e+00	0.0015	735.0	6.78%	1150.0	5.97%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-3	-7.976e+00	0.0020	406.0	3.74%	608.9	3.16%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-3	-7.938e+00	0.0021	782.0	7.21%	1233.7	6.40%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-3	-7.840e+00	0.0023	1404.0	12.95%	2291.5	11.89%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-3	-7.827e+00	0.0023	1253.0	11.56%	2033.5	10.55%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-3	-7.730e+00	0.0025	712.0	6.57%	1118.7	5.81%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-3	-7.683e+00	0.0026	598.0	5.52%	928.8	4.82%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-3	-7.577e+00	0.0028	1263.0	11.65%	2054.8	10.66%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-3	-7.559e+00	0.0028	337.0	3.11%	499.1	2.59%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-3	-7.555e+00	0.0028	470.0	4.33%	717.9	3.73%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-3	-7.436e+00	0.0031	364.0	3.36%	544.3	2.82%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-3	-7.369e+00	0.0033	42.0	0.39%	43.2	0.22%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-3	-7.222e+00	0.0038	189.0	1.74%	264.4	1.37%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-3	-7.158e+00	0.0040	303.0	2.79%	447.4	2.32%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-3	-7.141e+00	0.0040	763.0	7.04%	1212.0	6.29%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-3	-7.017e+00	0.0045	3605.0	33.25%	6136.4	31.84%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-3	-7.005e+00	0.0045	1341.0	12.37%	2197.1	11.40%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-2	-6.880e+00	0.0050	161.0	1.48%	222.3	1.15%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-2	-6.841e+00	0.0052	652.0	6.01%	1028.1	5.34%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-2	-6.826e+00	0.0052	351.0	3.24%	528.5	2.74%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-2	-6.752e+00	0.0055	1932.0	17.82%	3221.3	16.72%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-6.739e+00	0.0055	129.0	1.19%	173.4	0.90%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-2	-6.685e+00	0.0058	478.0	4.41%	739.0	3.84%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-2	-6.614e+00	0.0061	2443.0	22.53%	4112.6	21.34%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-2	-6.478e+00	0.0070	1257.0	11.59%	2062.7	10.70%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-2	-6.373e+00	0.0077	780.0	7.19%	1250.9	6.49%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-2	-6.331e+00	0.0079	2290.0	21.12%	3852.8	19.99%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-2	-6.112e+00	0.0097	141.0	1.30%	195.7	1.02%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-2	-6.048e+00	0.0103	418.0	3.86%	646.2	3.35%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-2	-5.972e+00	0.0110	1151.0	10.62%	1889.9	9.81%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e-2	-5.962e+00	0.0110	66.0	0.61%	81.2	0.42%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e-2	-5.925e+00	0.0113	260.0	2.40%	387.8	2.01%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-5.892e+00	0.0116	576.0	5.31%	912.1	4.73%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-2	-5.888e+00	0.0116	137.0	1.26%	190.5	0.99%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-2	-5.835e+00	0.0120	829.0	7.65%	1342.0	6.96%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-2	-5.620e+00	0.0148	1919.0	17.70%	3224.0	16.73%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2	-5.562e+00	0.0155	225.0	2.08%	333.3	1.73%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-5.464e+00	0.0169	124.0	1.14%	173.0	0.90%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-2	-5.422e+00	0.0175	1459.0	13.46%	2430.4	12.61%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-2	-5.407e+00	0.0176	250.0	2.31%	375.7	1.95%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-5.344e+00	0.0186	162.0	1.49%	233.7	1.21%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-2	-5.323e+00	0.0188	1136.0	10.48%	1875.8	9.73%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-2	-5.243e+00	0.0202	1355.0	12.50%	2254.4	11.70%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-2	-5.229e+00	0.0203	149.0	1.37%	213.2	1.11%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-2	-5.087e+00	0.0232	24.0	0.22%	24.9	0.13%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-2	-5.055e+00	0.0238	1447.0	13.35%	2417.6	12.55%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-2	-5.035e+00	0.0240	603.0	5.56%	969.4	5.03%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-2	-4.910e+00	0.0270	1230.0	11.34%	2045.8	10.62%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-4.907e+00	0.0270	175.0	1.61%	257.0	1.33%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-4.576e+00	0.0371	676.0	6.24%	1100.4	5.71%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-4.377e+00	0.0450	1194.0	11.01%	1994.8	10.35%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-1	-4.255e+00	0.0504	1282.0	11.82%	2149.7	11.16%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-1	-4.164e+00	0.0547	634.0	5.85%	1035.1	5.37%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-4.142e+00	0.0555	746.0	6.88%	1227.3	6.37%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-1	-4.065e+00	0.0595	1020.0	9.41%	1700.1	8.82%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-3.994e+00	0.0633	565.0	5.21%	920.3	4.78%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-3.975e+00	0.0641	539.0	4.97%	876.7	4.55%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-1	-3.933e+00	0.0663	3.0	0.03%	0.0	0.00%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-3.912e+00	0.0672	72.0	0.66%	99.3	0.52%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-1	-3.790e+00	0.0753	649.0	5.99%	1067.6	5.54%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-3.767e+00	0.0765	523.0	4.82%	852.6	4.42%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-1	-3.727e+00	0.0791	2146.0	19.79%	3669.6	19.04%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-1	-3.604e+00	0.0887	414.0	3.82%	669.6	3.47%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-3.540e+00	0.0938	217.0	2.00%	338.6	1.76%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-1	-3.329e+00	0.1151	1354.0	12.49%	2297.1	11.92%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-3.315e+00	0.1159	3688.0	34.02%	6397.4	33.20%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.308e+00	0.1159	159.0	1.47%	244.0	1.27%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-3.306e+00	0.1159	4807.0	44.34%	8378.2	43.48%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-3.286e+00	0.1167	247.0	2.28%	391.9	2.03%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-1	-3.269e+00	0.1179	86.0	0.79%	125.9	0.65%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.170e+00	0.1293	1375.0	12.68%	2338.7	12.14%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-3.160e+00	0.1296	605.0	5.58%	1003.1	5.21%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-1	-3.135e+00	0.1319	367.0	3.38%	596.8	3.10%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-3.098e+00	0.1360	1127.0	10.39%	1908.6	9.90%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-1	-3.060e+00	0.1404	982.0	9.06%	1657.5	8.60%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-3.050e+00	0.1408	1408.0	12.99%	2399.4	12.45%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-3.038e+00	0.1416	19.0	0.18%	22.2	0.12%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-2.981e+00	0.1488	33.0	0.30%	43.7	0.23%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-2.966e+00	0.1501	1343.0	12.39%	2288.3	11.88%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.945e+00	0.1522	222.0	2.05%	353.4	1.83%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-2.926e+00	0.1541	284.0	2.62%	459.0	2.38%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-1	-2.910e+00	0.1557	1271.0	11.72%	2164.6	11.23%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-1	-2.908e+00	0.1557	112.0	1.03%	170.7	0.89%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-2.794e+00	0.1726	344.0	3.17%	562.5	2.92%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-1	-2.774e+00	0.1749	56.0	0.52%	80.5	0.42%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-2.766e+00	0.1753	163.0	1.50%	257.0	1.33%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.758e+00	0.1755	468.0	4.32%	775.8	4.03%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-2.755e+00	0.1755	302.0	2.79%	491.9	2.55%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-2.730e+00	0.1782	237.0	2.19%	381.7	1.98%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-2.692e+00	0.1839	501.0	4.62%	833.8	4.33%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-2.667e+00	0.1875	1607.0	14.82%	2760.0	14.32%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-2.657e+00	0.1882	348.0	3.21%	571.9	2.97%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-2.645e+00	0.1893	1618.0	14.92%	2780.0	14.43%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-2.588e+00	0.1992	611.0	5.64%	1025.2	5.32%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-1	-2.569e+00	0.2019	151.0	1.39%	238.0	1.24%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-2.519e+00	0.2108	1774.0	16.36%	3057.3	15.87%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-2.504e+00	0.2129	11.0	0.10%	12.8	0.07%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-2.477e+00	0.2174	2925.0	26.98%	5085.9	26.39%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-1	-2.439e+00	0.2245	1264.0	11.66%	2166.9	11.25%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-1	-2.425e+00	0.2263	780.0	7.19%	1322.1	6.86%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-2.384e+00	0.2344	236.0	2.18%	384.6	2.00%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-1	-2.359e+00	0.2390	1745.0	16.09%	3012.7	15.63%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-1	-2.353e+00	0.2391	722.0	6.66%	1223.5	6.35%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-1	-2.338e+00	0.2412	35.0	0.32%	49.1	0.25%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.331e+00	0.2412	58.0	0.53%	86.4	0.45%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.331e+00	0.2412	58.0	0.53%	86.4	0.45%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-2.308e+00	0.2445	75.0	0.69%	114.1	0.59%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-2.280e+00	0.2501	521.0	4.81%	876.5	4.55%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.276e+00	0.2501	1030.0	9.50%	1763.0	9.15%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-2.264e+00	0.2513	441.0	4.07%	738.9	3.83%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.241e+00	0.2557	134.0	1.24%	213.1	1.11%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-2.231e+00	0.2569	1135.0	10.47%	1947.7	10.11%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.218e+00	0.2588	286.0	2.64%	472.2	2.45%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.218e+00	0.2588	332.0	3.06%	551.2	2.86%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.176e+00	0.2672	1597.0	14.73%	2759.6	14.32%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-2.159e+00	0.2703	23.0	0.21%	31.9	0.17%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.139e+00	0.2729	79.0	0.73%	122.6	0.64%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.139e+00	0.2729	79.0	0.73%	122.6	0.64%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.118e+00	0.2770	1174.0	10.83%	2020.0	10.48%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.117e+00	0.2770	2451.0	22.61%	4265.7	22.14%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-2.113e+00	0.2770	38.0	0.35%	55.5	0.29%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.061e+00	0.2887	84.0	0.77%	131.5	0.68%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.056e+00	0.2888	476.0	4.39%	803.2	4.17%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-2.025e+00	0.2962	886.0	8.17%	1518.5	7.88%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.015e+00	0.2977	412.0	3.80%	693.6	3.60%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.990e+00	0.3039	68.0	0.63%	105.2	0.55%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.926e+00	0.3221	91.0	0.84%	144.2	0.75%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.883e+00	0.3348	300.0	2.77%	502.9	2.61%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.861e+00	0.3404	149.0	1.37%	243.8	1.27%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.855e+00	0.3406	324.0	2.99%	544.3	2.82%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.847e+00	0.3418	29.0	0.27%	42.9	0.22%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.827e+00	0.3469	3710.0	34.22%	6506.6	33.77%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.813e+00	0.3501	357.0	3.29%	602.6	3.13%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.797e+00	0.3541	875.0	8.07%	1506.5	7.82%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-1.779e+00	0.3590	30.0	0.28%	44.7	0.23%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.775e+00	0.3590	1036.0	9.56%	1789.8	9.29%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.759e+00	0.3627	203.0	1.87%	337.3	1.75%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.747e+00	0.3651	97.0	0.89%	156.3	0.81%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.739e+00	0.3662	778.0	7.18%	1338.2	6.94%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-1.724e+00	0.3700	334.0	3.08%	564.6	2.93%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.700e+00	0.3773	443.0	4.09%	754.1	3.91%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-1.655e+00	0.3930	257.0	2.37%	432.9	2.25%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.638e+00	0.3979	3313.0	30.56%	5814.2	30.17%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.622e+00	0.4024	826.0	7.62%	1427.0	7.41%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.604e+00	0.4078	344.0	3.17%	584.6	3.03%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.594e+00	0.4100	430.0	3.97%	734.6	3.81%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.532e+00	0.4342	308.0	2.84%	523.5	2.72%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.526e+00	0.4348	1778.0	16.40%	3106.5	16.12%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.526e+00	0.4348	382.0	3.52%	652.1	3.38%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.521e+00	0.4348	120.0	1.11%	198.6	1.03%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.516e+00	0.4348	434.0	4.00%	743.0	3.86%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-1.443e+00	0.4639	737.0	6.80%	1276.2	6.62%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.438e+00	0.4641	2978.0	27.47%	5233.5	27.16%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.429e+00	0.4663	161.0	1.48%	270.4	1.40%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.411e+00	0.4729	37.0	0.34%	58.3	0.30%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.383e+00	0.4842	521.0	4.81%	899.3	4.67%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.381e+00	0.4842	5.0	0.05%	6.4	0.03%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.322e+00	0.5102	2718.0	25.07%	4780.4	24.81%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.309e+00	0.5142	27.0	0.25%	42.6	0.22%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.295e+00	0.5196	378.0	3.49%	651.7	3.38%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.287e+00	0.5216	85.0	0.78%	141.9	0.74%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-1.284e+00	0.5216	4415.0	40.72%	7792.4	40.44%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.256e+00	0.5330	22.0	0.20%	34.3	0.18%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.249e+00	0.5349	522.0	4.81%	906.0	4.70%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.240e+00	0.5373	1892.0	17.45%	3323.2	17.25%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.238e+00	0.5373	147.0	1.36%	249.7	1.30%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.209e+00	0.5497	820.0	7.56%	1431.2	7.43%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.189e+00	0.5582	1108.0	10.22%	1940.5	10.07%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.187e+00	0.5582	748.0	6.90%	1305.9	6.78%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.185e+00	0.5582	407.0	3.75%	705.1	3.66%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.182e+00	0.5582	1829.0	16.87%	3215.4	16.69%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.172e+00	0.5585	1875.0	17.29%	3297.9	17.11%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.167e+00	0.5590	356.0	3.28%	616.7	3.20%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.156e+00	0.5628	510.0	4.70%	887.6	4.61%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.138e+00	0.5711	567.0	5.23%	988.3	5.13%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-1.130e+00	0.5731	1069.0	9.86%	1874.8	9.73%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.107e+00	0.5843	129.0	1.19%	220.2	1.14%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.098e+00	0.5868	50.0	0.46%	83.4	0.43%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.097e+00	0.5868	986.0	9.09%	1729.8	8.98%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.093e+00	0.5868	1635.0	15.08%	2877.9	14.94%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.085e+00	0.5876	111.0	1.02%	189.5	0.98%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.082e+00	0.5876	656.0	6.05%	1147.3	5.95%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.080e+00	0.5876	73.0	0.67%	123.1	0.64%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-1.065e+00	0.5923	2854.0	26.32%	5039.7	26.15%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.048e+00	0.6004	1412.0	13.02%	2485.8	12.90%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.036e+00	0.6055	469.0	4.33%	819.8	4.25%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.011e+00	0.6178	201.0	1.85%	348.2	1.81%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.010e+00	0.6178	21.0	0.19%	34.2	0.18%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.006e+00	0.6178	764.0	7.05%	1341.6	6.96%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-9.896e-01	0.6243	154.0	1.42%	267.0	1.39%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-9.586e-01	0.6415	290.0	2.67%	506.7	2.63%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-9.534e-01	0.6424	388.0	3.58%	679.9	3.53%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-9.522e-01	0.6424	1306.0	12.05%	2303.5	11.95%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-9.394e-01	0.6465	3.0	0.03%	4.5	0.02%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-9.307e-01	0.6497	417.0	3.85%	731.4	3.80%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-8.980e-01	0.6688	196.0	1.81%	342.1	1.78%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-8.930e-01	0.6697	2046.0	18.87%	3619.2	18.78%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-8.747e-01	0.6796	774.0	7.14%	1365.1	7.08%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-8.561e-01	0.6897	95.0	0.88%	165.5	0.86%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-8.450e-01	0.6949	1411.0	13.01%	2496.7	12.96%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-8.433e-01	0.6949	597.0	5.51%	1053.9	5.47%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-8.349e-01	0.6968	122.0	1.13%	213.6	1.11%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-8.303e-01	0.6975	683.0	6.30%	1206.3	6.26%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-8.031e-01	0.7141	95.0	0.88%	166.9	0.87%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-7.762e-01	0.7310	939.0	8.66%	1663.6	8.63%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-7.498e-01	0.7478	280.0	2.58%	495.6	2.57%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-7.452e-01	0.7485	992.0	9.15%	1759.6	9.13%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-7.446e-01	0.7485	396.0	3.65%	701.4	3.64%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-7.216e-01	0.7610	191.0	1.76%	338.7	1.76%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-7.151e-01	0.7632	94.0	0.87%	166.5	0.86%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-7.063e-01	0.7672	439.0	4.05%	779.8	4.05%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-7.017e-01	0.7680	319.0	2.94%	566.4	2.94%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-7.003e-01	0.7680	494.0	4.56%	877.4	4.55%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-6.985e-01	0.7680	109.0	1.01%	193.0	1.00%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-6.890e-01	0.7697	56.0	0.52%	99.8	0.52%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-6.715e-01	0.7806	365.0	3.37%	649.5	3.37%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-6.328e-01	0.8086	700.0	6.46%	1247.4	6.47%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.249e-01	0.8122	420.0	3.87%	749.3	3.89%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-6.238e-01	0.8122	1423.0	13.12%	2535.0	13.16%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-6.191e-01	0.8122	772.0	7.12%	1376.1	7.14%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-5.738e-01	0.8460	232.0	2.14%	416.8	2.16%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.530e-01	0.8609	33.0	0.30%	60.7	0.31%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-5.351e-01	0.8735	932.0	8.60%	1667.6	8.65%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-5.296e-01	0.8753	207.0	1.91%	373.2	1.94%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-5.275e-01	0.8753	1563.0	14.42%	2792.6	14.49%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-5.232e-01	0.8753	189.0	1.74%	341.8	1.77%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-5.154e-01	0.8789	1013.0	9.34%	1813.7	9.41%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-5.123e-01	0.8789	93.0	0.86%	169.9	0.88%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-5.098e-01	0.8789	14.0	0.13%	26.0	0.14%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-4.990e-01	0.8846	484.0	4.46%	870.2	4.52%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-4.908e-01	0.8889	258.0	2.38%	466.1	2.42%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-4.906e-01	0.8889	557.0	5.14%	1001.5	5.20%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-4.841e-01	0.8890	9.0	0.08%	17.6	0.09%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-4.798e-01	0.8899	34.0	0.31%	63.9	0.33%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-4.609e-01	0.9040	206.0	1.90%	374.4	1.94%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.405e-01	0.9196	44.0	0.41%	83.0	0.43%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-4.340e-01	0.9226	3416.0	31.51%	6103.8	31.68%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-4.333e-01	0.9226	789.0	7.28%	1420.5	7.37%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-4.310e-01	0.9226	3209.0	29.60%	5735.8	29.77%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-4.287e-01	0.9226	137.0	1.26%	251.2	1.30%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-4.256e-01	0.9226	352.0	3.25%	638.7	3.31%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-4.214e-01	0.9226	107.0	0.99%	197.4	1.02%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-4.178e-01	0.9226	403.0	3.72%	730.3	3.79%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-4.080e-01	0.9259	298.0	2.75%	542.3	2.81%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-3.894e-01	0.9403	32.0	0.30%	61.0	0.32%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.850e-01	0.9415	167.0	1.54%	307.6	1.60%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-3.811e-01	0.9422	46.0	0.42%	87.2	0.45%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-3.786e-01	0.9422	19.0	0.18%	37.4	0.19%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-3.664e-01	0.9502	3820.0	35.23%	6833.7	35.46%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-3.555e-01	0.9577	409.0	3.77%	745.9	3.87%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-3.432e-01	0.9665	106.0	0.98%	198.4	1.03%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-3.431e-01	0.9665	1751.0	16.15%	3149.2	16.34%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-3.308e-01	0.9726	322.0	2.97%	590.8	3.07%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.256e-01	0.9746	1987.0	18.33%	3573.8	18.55%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-3.240e-01	0.9746	446.0	4.11%	814.8	4.23%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-3.193e-01	0.9748	88.0	0.81%	166.9	0.87%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-3.126e-01	0.9783	679.0	6.26%	1234.5	6.41%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-2.926e-01	0.9951	3861.0	35.61%	6920.1	35.91%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-2.904e-01	0.9951	2628.0	24.24%	4723.7	24.51%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.858e-01	0.9958	90.0	0.83%	171.9	0.89%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.632e-01	1.0000	263.0	2.43%	488.2	2.53%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-2.604e-01	1.0000	140.0	1.29%	264.7	1.37%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.589e-01	1.0000	164.0	1.51%	308.4	1.60%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.475e-01	1.0000	1245.0	11.48%	2258.9	11.72%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-2.271e-01	1.0000	18.0	0.17%	38.8	0.20%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.271e-01	1.0000	382.0	3.52%	707.6	3.67%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-2.261e-01	1.0000	194.0	1.79%	365.0	1.89%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.255e-01	1.0000	457.0	4.22%	843.5	4.38%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.229e-01	1.0000	75.0	0.69%	146.3	0.76%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.223e-01	1.0000	281.0	2.59%	524.4	2.72%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.217e-01	1.0000	190.0	1.75%	358.6	1.86%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.182e-01	1.0000	550.0	5.07%	1012.8	5.26%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.079e-01	1.0000	4.0	0.04%	10.9	0.06%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-2.033e-01	1.0000	1384.0	12.77%	2515.0	13.05%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-1.993e-01	1.0000	218.0	2.01%	411.3	2.13%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.978e-01	1.0000	288.0	2.66%	539.1	2.80%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.967e-01	1.0000	133.0	1.23%	255.3	1.33%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-1.751e-01	1.0000	1106.0	10.20%	2021.7	10.49%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-1.747e-01	1.0000	1622.0	14.96%	2948.8	15.30%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.585e-01	1.0000	358.0	3.30%	671.9	3.49%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.577e-01	1.0000	51.0	0.47%	104.7	0.54%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.554e-01	1.0000	18.0	0.17%	40.9	0.21%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.467e-01	1.0000	604.0	5.57%	1120.8	5.82%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.384e-01	1.0000	514.0	4.74%	958.7	4.98%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.179e-01	1.0000	96.0	0.89%	192.5	1.00%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.173e-01	1.0000	1475.0	13.60%	2699.7	14.01%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.140e-01	1.0000	116.0	1.07%	230.3	1.20%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.117e-01	1.0000	47.0	0.43%	99.4	0.52%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.113e-01	1.0000	1.0	0.01%	4.0	0.02%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.070e-01	1.0000	96.0	0.89%	193.4	1.00%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.070e-01	1.0000	96.0	0.89%	193.3	1.00%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.026e-01	1.0000	1236.0	11.40%	2273.3	11.80%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-9.501e-02	1.0000	1391.0	12.83%	2555.8	13.26%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-9.101e-02	1.0000	161.0	1.48%	317.6	1.65%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-7.367e-02	1.0000	477.0	4.40%	904.5	4.69%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-7.107e-02	1.0000	1207.0	11.13%	2232.2	11.58%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.666e-02	1.0000	133.0	1.23%	269.0	1.40%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-6.551e-02	1.0000	1641.0	15.14%	3018.0	15.66%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-6.276e-02	1.0000	1073.0	9.90%	1993.6	10.35%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.203e-02	1.0000	175.0	1.61%	348.6	1.81%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-6.035e-02	1.0000	2820.0	26.01%	5139.7	26.67%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-5.644e-02	1.0000	159.0	1.47%	319.9	1.66%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-5.468e-02	1.0000	4290.0	39.57%	7770.9	40.33%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-5.409e-02	1.0000	714.0	6.59%	1344.1	6.98%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-4.694e-02	1.0000	2337.0	21.56%	4282.4	22.22%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-4.122e-02	1.0000	540.0	4.98%	1031.4	5.35%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-4.088e-02	1.0000	842.0	7.77%	1584.5	8.22%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-3.768e-02	1.0000	702.0	6.47%	1330.6	6.91%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-3.764e-02	1.0000	144.0	1.33%	295.4	1.53%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-3.653e-02	1.0000	79.0	0.73%	170.0	0.88%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-3.211e-02	1.0000	728.0	6.71%	1381.9	7.17%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.831e-02	1.0000	39.0	0.36%	92.1	0.48%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.768e-02	1.0000	198.0	1.83%	401.4	2.08%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-2.509e-02	1.0000	2409.0	22.22%	4433.2	23.01%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.494e-02	1.0000	1401.0	12.92%	2613.4	13.56%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.303e-02	1.0000	11.0	0.10%	33.4	0.17%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.296e-02	1.0000	409.0	3.77%	799.4	4.15%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-2.155e-02	1.0000	82.0	0.76%	181.0	0.94%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.027e-02	1.0000	430.0	3.97%	840.9	4.36%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-1.934e-02	1.0000	869.0	8.02%	1650.4	8.56%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.885e-02	1.0000	1655.0	15.26%	3082.0	15.99%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.785e-02	1.0000	19.0	0.18%	52.3	0.27%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-1.616e-02	1.0000	293.0	2.70%	587.7	3.05%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.419e-02	1.0000	290.0	2.67%	583.4	3.03%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.361e-02	1.0000	632.0	5.83%	1221.0	6.34%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.331e-02	1.0000	2036.0	18.78%	3780.8	19.62%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.286e-02	1.0000	301.0	2.78%	605.3	3.14%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.279e-02	1.0000	47.0	0.43%	114.0	0.59%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.266e-02	1.0000	237.0	2.19%	484.2	2.51%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.255e-02	1.0000	79.0	0.73%	178.7	0.93%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.252e-02	1.0000	73.0	0.67%	166.0	0.86%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.243e-02	1.0000	463.0	4.27%	909.3	4.72%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.181e-02	1.0000	57.0	0.53%	134.1	0.70%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.115e-02	1.0000	1.0	0.01%	8.2	0.04%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.093e-02	1.0000	283.0	2.61%	573.2	2.97%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.036e-02	1.0000	62.0	0.57%	145.2	0.75%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-9.650e-03	1.0000	2609.0	24.06%	4823.2	25.03%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-8.672e-03	1.0000	3150.0	29.05%	5800.0	30.10%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-8.424e-03	1.0000	2024.0	18.67%	3771.1	19.57%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-6.782e-03	1.0000	309.0	2.85%	628.6	3.26%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-3.865e-03	1.0000	616.0	5.68%	1212.4	6.29%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-3.158e-03	1.0000	971.0	8.96%	1873.1	9.72%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.818e-03	1.0000	867.0	8.00%	1683.1	8.73%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-2.648e-03	1.0000	101.0	0.93%	233.2	1.21%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-2.371e-03	1.0000	1970.0	18.17%	3705.6	19.23%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.046e-03	1.0000	1160.0	10.70%	2229.2	11.57%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.942e-03	1.0000	77.0	0.71%	186.0	0.97%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.712e-03	1.0000	5.0	0.05%	25.9	0.13%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.297e-03	1.0000	86.0	0.79%	207.7	1.08%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.242e-03	1.0000	82.0	0.76%	199.4	1.03%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.041e-03	1.0000	70.0	0.65%	175.7	0.91%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-3.890e-04	1.0000	2478.0	22.86%	4668.8	24.23%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-2.840e-04	1.0000	4.0	0.04%	26.1	0.14%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.840e-04	1.0000	589.0	5.43%	1197.9	6.22%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-2.700e-04	1.0000	2510.0	23.15%	4734.8	24.57%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-2.640e-04	1.0000	830.0	7.66%	1651.3	8.57%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.480e-04	1.0000	3046.0	28.09%	5717.4	29.67%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.410e-04	1.0000	358.0	3.30%	763.4	3.96%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-8.100e-05	1.0000	98.0	0.90%	248.8	1.29%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-5.700e-05	1.0000	14.0	0.13%	59.9	0.31%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.000e-05	1.0000	535.0	4.93%	1124.5	5.84%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.400e-05	1.0000	898.0	8.28%	1818.6	9.44%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-8.000e-06	1.0000	3019.0	27.85%	5728.0	29.73%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-0.000e+00	1.0000	701.0	6.47%	1487.8	7.72%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-0.000e+00	1.0000	999.0	9.21%	2212.4	11.48%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-0.000e+00	1.0000	1161.0	10.71%	2528.0	13.12%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-0.000e+00	1.0000	1668.0	15.38%	3519.5	18.26%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	1914.0	17.65%	4049.1	21.01%